4DN NEWSLETTER
July 2020

4DN News

4DN Publications

Please notify 4DN OH at oh@4dnucleome.org of your new publications and tweet it by tagging us with @4DNucleome.

Your publication will be added to the 4DN Publication Repository accessible from the 4D Nucleome Web Portal.

4DN Pre-prints

Please notify OH (oh@4dnucleome.org) and Riccardo Calandrelli (rcalandrelli@eng.ucsd.edu) to add your pre-print into the 4DN bioRxiv channel and tweet it by tagging us with @4DNucleome.

Your pre-print will be added also to the 4DN Pre-print Repository accessible from the 4D Nucleome Web Portal.

Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
Beagrie, R. A., Thieme, C. J., Annunziatella, C., Baugher, C., Zhang, Y., Schueler, M., Kramer, D. C., Chiariello, A. M., Bianco, S., Kukalev, A., Li, Y., Kempfer, R., Scialdone, A., Welch, L. A., Nicodemi, M., Pombo, A.

10.1101/2020.07.31.230284 - Posted: 2020-07-31

PartSeg, a Tool for Quantitative Feature Extraction From 3D Microscopy Images for Dummies
Bokota, G., Sroka, J., Basu, S., Das, N., Trzaskoma, P., Yushkevich, Y., Grabowska, A., Magalska, A., Plewczynski, D.

10.1101/2020.07.16.206789 - Posted: 2020-07-17

Simultaneous Epigenetic Perturbation and Genome Imaging Reveal Distinct Roles of H3K9me3 in Chromatin Architecture and Transcription
Feng, Y., Wang, Y., Wang, X., He, X., Yang, C., Naseri, A., Pederson, T., Zheng, J., Zhang, S., Xiao, X., Xie, W., Ma, H.

10.1101/2020.07.15.204719 - Posted: 2020-07-16

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
Huang, H., Zhu, Q., Jussila, A., Han, Y., Bintu, B., Kern, C., Conte, M., Zhang, Y., Bianco, S., Chiariello, A., Yu, M., Hu, R., Juric, I., Hu, M., Nicodemi, M., Zhuang, X., Ren, B.

10.1101/2020.07.07.192526 - Posted: 2020-07-08

Scientific Webinar Series

We have concluded the Scientific Webinar Series sessions for the first phase of 4D Nucleome. Thank you to all who have presented and joined over the past 5 years!
 
You can find Scientific Webinar presentation slides on the 4DN Wiki. 

Upcoming 4DN meetings (August 2020)

  • August 6 (10am PT, 1pm ET) JAWG
  • August 14 (9am PT, 12pm ET) NOFIC-AICS WG
  • August 18 (8am PT, 11am ET) Steering Committee
  • August 20 (10am PT, 1pm ET) JAWG
  • August 24 (11am PT, 2pm ET) Omics WG
  • August 28 (9am PT, 12pm ET) NOFIC-AICS WG

Working Group email lists

  • Policy WG - pubpol@4dnucleome.org
  • Policy WG - pubpol@4dnucleome.org
  • Omics WG - omics@4dnucleome.org
  • Imaging WG - image@4dnucleome.org
  • Data Analysis WG - analysis@4dnucleome.org
  • Outreach WG - outreach@4dnucleome.org
  • Cell Lines WG - cells@4dnucleome.org
  • Joint Analysis WG - meeting-4dn-dj@4dnucleome.org

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